Basic Information
Locus ID:
Chr24G006050
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000024 | 13754767 | 13782027 | + | Chr24G006050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06410 | PB1_UP2 | 168 | 263 | 6.32159E-45 | - |
| CDD | cd13999 | STKc_MAP3K-like | 942 | 1199 | 9.23463E-112 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 938 | 1198 | 2.8E-62 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 181 | 265 | 8.8E-19 | IPR000270 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 926 | 1196 | 7.42E-78 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 180 | 266 | 4.32E-22 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1024 | 1210 | 4.0E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 929 | 1023 | 6.4E-26 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 183 | 266 | 4.8E-13 | - |
| SMART | SM00666 | PB1_new | 179 | 266 | 2.7E-30 | IPR000270 |
| SMART | SM00220 | serkin_6 | 936 | 1205 | 3.6E-59 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 936 | 1202 | 41.686127 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1061 | 1073 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 942 | 967 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1170 | 1192 | 1.5E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1018 | 1031 | 1.5E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1126 | 1148 | 1.5E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1055 | 1073 | 1.5E-14 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 724 | 753 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 739 | 753 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79570.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_034582258.1 | serine/threonine-protein kinase STE20-like [Setaria viridis] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VUC4 | Protein kinase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_12921 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology