Basic Information
Locus ID:
Chr24G001820
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000024 | 1851090 | 1852316 | + | Chr24G001820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 25 | 150 | 1.40618E-15 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 204 | 312 | 5.7E-23 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 193 | 313 | 2.28E-27 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 23 | 153 | 1.64E-21 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 21 | 153 | 2.3E-17 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 187 | 309 | 5.4E-32 | IPR011333 |
| Gene3D | G3DSA:1.25.40.420 | - | 312 | 382 | 4.7E-11 | - |
| SMART | SM00225 | BTB_4 | 210 | 313 | 5.7E-22 | IPR000210 |
| ProSiteProfiles | PS50873 | Plant heme peroxidase family profile. | 137 | 383 | 8.63294 | IPR002016 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 210 | 281 | 18.16184 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 16 | 149 | 12.566675 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 195 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_025800261.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum hallii] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W114 | BTB domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_14488 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_7AG0554960, gene-QOZ80_7BG0586030 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr24G001820 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-53944 |