Basic Information
Locus ID:
Chr24G001810
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Speckle-type POZ protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000024 | 1843291 | 1844625 | + | Chr24G001810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 7 | 139 | 9.63217E-18 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 181 | 296 | 2.6E-21 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 174 | 297 | 2.24E-23 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 4 | 143 | 2.29E-25 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 298 | 374 | 8.4E-10 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 5 | 142 | 1.7E-22 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 166 | 294 | 2.9E-29 | IPR011333 |
| SMART | SM00225 | BTB_4 | 185 | 298 | 1.7E-20 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 5 | 138 | 18.268673 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 185 | 256 | 17.313879 | IPR000210 |
| ProSiteProfiles | PS50873 | Plant heme peroxidase family profile. | 125 | 384 | 10.332195 | IPR002016 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_025800261.1 | BTB/POZ and MATH domain-containing protein 2-like [Panicum hallii] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1E5W9M4 | BTB/POZ and MATH domain-containing protein 2 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0005031 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_7AG0554940, gene-QOZ80_7AG0554950 ... |
| Poaceae | Oryza coarctata | 1 | Oco07G002020 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g18830.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G028500 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G001810, Chr28G000690 |