Basic Information
Locus ID:
Chr24G000250
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000024 | 401921 | 405209 | + | Chr24G000250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 104 | 2.4E-8 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 446 | - | - |
| Coils | Coil | Coil | 403 | 426 | - | - |
| Coils | Coil | Coil | 78 | 98 | - | - |
| Coils | Coil | Coil | 193 | 234 | - | - |
| Coils | Coil | Coil | 260 | 294 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30580.3 | - | 0 |
| RefSeq | XP_012699325.1 | plectin-like isoform X1 [Setaria italica] | 0 |
| Q94AY3 | E3 ubiquitin protein ligase DRIP2 OS=Arabidopsis thaliana OX=3702 GN=DRIP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W1X8 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_15464 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH03.595 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7BG0589550 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr24G000250, Chr27G008220 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3405 |