Basic Information
Locus ID:
Chr23G019700
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 38343820 | 38383859 | - | Chr23G019700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 280 | 416 | 8.56561E-69 | - |
| CDD | cd18015 | DEXHc_RecQ1 | 71 | 276 | 1.09021E-129 | - |
| Pfam | PF16124 | RecQ zinc-binding | 419 | 475 | 1.1E-9 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 608 | 669 | 2.9E-5 | IPR002121 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 92 | 258 | 6.5E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 301 | 406 | 4.5E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 128 | 423 | 2.18E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 20 | 279 | 5.1E-89 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 480 | 585 | 1.3E-23 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 280 | 477 | 5.1E-62 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 604 | 675 | 1.1E-10 | IPR044876 |
| SMART | SM00487 | ultradead3 | 85 | 288 | 4.2E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 326 | 407 | 1.8E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 82 | 494 | 7.4E-155 | IPR004589 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 600 | 680 | 11.953415 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 97 | 272 | 22.800951 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 297 | 449 | 19.287613 | IPR001650 |
| Coils | Coil | Coil | 596 | 623 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | NP_001168975.1 | uncharacterized protein LOC100382802 [Zea mays] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | C0PAU0 | ATP-dependent DNA helicase OS=Zea mays OX=4577 GN=100382802 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology