Basic Information
Locus ID:
Chr23G019530
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 37746824 | 37750720 | + | Chr23G019530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 259 | 521 | 6.07987E-92 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 256 | 518 | 3.3E-42 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 235 | 518 | 2.32E-72 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 230 | 328 | 5.3E-33 | - |
| Gene3D | G3DSA:1.20.930.20 | - | 10 | 127 | 4.9E-23 | IPR036537 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 329 | 526 | 3.9E-53 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 253 | 521 | 34.944206 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23190.3 | - | 0 |
| RefSeq | XP_012703880.1 | G-type lectin S-receptor-like serine/threonine-protein kinase SD1-13 [Setaria italica] | 0 |
| Q9LDQ3 | Cysteine-rich receptor-like protein kinase 34 OS=Arabidopsis thaliana OX=3702 GN=CRK34 PE=3 SV=3 | 0 | |
| TrEMBL | A0A5J9UJX8 | Protein kinase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_25997 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH05.3360, CH04.2550 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_9AG0692060, gene-QOZ80_9AG0692200 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0642600.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_065633, gene-QYE76_065634 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_05G234100, gene-BS78_K259400, gene-BS78_K259700 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103436, Pt_Chr0103449 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G006690, Chr23G019530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G121900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG064110, gene_TRIDC7AG005940 |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G433800.1, TraesCS7A02G056800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb165320_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19130, Zma_g19133 |