Basic Information
Locus ID:
Chr23G018840
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 35968193 | 35969584 | + | Chr23G018840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 37 | 243 | 5.1E-51 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 29 | 276 | 1.01E-38 | IPR036041 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 206 | 280 | 2.1E-29 | IPR016139 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 28 | 205 | 2.4E-41 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 38 | 51 | 2.3E-6 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 194 | 214 | 2.3E-6 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 88 | 103 | 2.3E-6 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004975022.1 | ribosome-inactivating protein [Setaria italica] | 0 |
| P28522 | Ribosome-inactivating protein OS=Zea mays OX=4577 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SHI1 | rRNA N-glycosidase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_56433 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology