Basic Information
Locus ID:
Chr23G014710
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ABC transporter C family member 9
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 15353716 | 15361087 | - | Chr23G014710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 967 | 1261 | 1.37304E-89 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1284 | 1504 | 4.15544E-121 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 339 | 627 | 4.77798E-94 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 658 | 853 | 7.40025E-106 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 982 | 1208 | 4.8E-33 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1303 | 1451 | 3.3E-30 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 339 | 605 | 4.9E-24 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 671 | 805 | 1.9E-19 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 966 | 1272 | 5.49E-54 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1277 | 1516 | 1.58E-66 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 338 | 627 | 3.92E-28 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 652 | 866 | 3.48E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 652 | 875 | 3.1E-66 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 315 | 636 | 7.9E-46 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1269 | 1521 | 3.0E-80 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 930 | 1267 | 1.0E-61 | IPR036640 |
| SMART | SM00382 | AAA_5 | 680 | 853 | 4.1E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1312 | 1504 | 7.4E-10 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 341 | 619 | 31.641199 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 653 | 876 | 21.575409 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1288 | 1520 | 16.780182 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 969 | 1249 | 38.607929 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 778 | 792 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 897 | 944 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 884 | 944 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_025823256.1 | putative ABC transporter C family member 15 [Panicum hallii] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9TWG9 | ABC transporter C family member 15 OS=Eragrostis curvula OX=38414 GN=EJB05_39244 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology