Basic Information
Locus ID:
Chr23G013390
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 12795005 | 12796342 | + | Chr23G013390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 16 | 58 | 1.50981E-20 | - |
| Pfam | PF04564 | U-box domain | 12 | 86 | 7.7E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 191 | 422 | 2.76E-13 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 91 | 3.49E-26 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 111 | 422 | 3.5E-16 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 91 | 1.6E-25 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 15 | 82 | 3.2E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 11 | 89 | 34.172703 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_039775496.1 | E3 ubiquitin-protein ligase PUB23-like [Panicum virgatum] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TTB1 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_38078 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology