Basic Information
Locus ID:
Chr23G011730
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 10657317 | 10662548 | + | Chr23G011730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 12 | 50 | 1.3E-8 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 151 | 167 | 1.3 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 286 | 556 | 4.6E-44 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 14 | 185 | 1.08E-36 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 264 | 560 | 2.32E-79 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 362 | 579 | 2.3E-69 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 254 | 361 | 6.3E-40 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 10 | 196 | 2.6E-61 | IPR032675 |
| Gene3D | G3DSA:1.20.5.510 | Single helix bin | 212 | 249 | 3.4E-5 | - |
| SMART | SM00220 | serkin_6 | 285 | 559 | 1.2E-35 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 285 | 572 | 37.205647 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 291 | 313 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 408 | 420 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G34210.1 | somatic embryogenesis receptor-like kinase 2. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. | 0 |
| RefSeq | XP_015636497.1 | LRR receptor kinase SERK2-like [Oryza sativa Japonica Group] | 0 |
| Q7XV05 | LRR receptor kinase SERK2 OS=Oryza sativa subsp. japonica OX=39947 GN=SERK2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8J5SVR2 | Protein kinase domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0014g46916 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology