Basic Information
Locus ID:
Chr23G011460
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 10361586 | 10364054 | + | Chr23G011460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 95 | 130 | 9.3E-5 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 253 | 274 | 0.053 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 436 | 698 | 1.3E-33 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 436 | 700 | 3.7E-54 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 111 | 284 | 1.02E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 202 | 290 | 3.8E-16 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 422 | 506 | 6.9E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 100 | 201 | 9.4E-24 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 508 | 722 | 1.5E-43 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 432 | 703 | 31.9478 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 438 | 460 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 705 | 734 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 716 | 734 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48480.1 | receptor-like kinase 1. Arabidopsis thaliana receptor-like protein kinase (RKL1) gene | 0 |
| RefSeq | XP_039821511.1 | probable inactive receptor kinase RLK902 [Panicum virgatum] | 0 |
| Q9LP77 | Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana OX=3702 GN=RKL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0Q0N4 | Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_7NG248700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH09.1261, BH09.1371, CH09.1478 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0314710, gene-QOZ80_4BG0345750 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0173600.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_044429 |
| Poaceae | Oryza coarctata | 2 | Oco07G007760, Oco08G007670 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g38910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G123900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302434, Pt_Chr0302463 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G011460, Chr25G008420, Chr26G008110, Chr30G008290 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G570900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG047780, gene_TRIDC2BG050280 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G337000.1, TraesCS2B02G344900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb080550_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-53733 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g19850, Zma_g21409 |