Basic Information
Locus ID:
Chr23G010560
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
NAC domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 9574497 | 9578147 | + | Chr23G010560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 58 | 200 | 8.1E-21 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 43 | 219 | 2.22E-35 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 66 | 224 | 7.8E-28 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 57 | 219 | 30.111143 | IPR003441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 370 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_034602749.1 | SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1 [Setaria viridis] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TWB8 | NAC domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_39115 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology