Basic Information
Locus ID:
Chr23G008090
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 7149551 | 7152779 | + | Chr23G008090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 42 | 96 | 1.47225E-23 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 44 | 94 | 4.7E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 41 | 107 | 6.85E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 32 | 152 | 1.1E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 44 | 94 | 1.3E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 44 | 95 | 12.518784 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 59 | 68 | - | IPR017907 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G03510.1 | RING membrane-anchor 1. RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. Has E3 ubiquitin ligase activity. | 0 |
| RefSeq | XP_039775040.1 | E3 ubiquitin-protein ligase RMA1H1-like [Panicum virgatum] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9IKN8 | RING-type E3 ubiquitin transferase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology