Basic Information
Locus ID:
Chr23G005430
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 4107316 | 4110232 | - | Chr23G005430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00098 | Zinc knuckle | 150 | 165 | 2.3E-4 | IPR001878 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 133 | 167 | 2.69E-5 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 129 | 167 | 3.2E-7 | - |
| SMART | SM00343 | c2hcfinal6 | 150 | 166 | 0.015 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 133 | 147 | 16.0 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 151 | 166 | 9.224166 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 227 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 409 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021304464.1 | uncharacterized protein LOC110430798 [Sorghum bicolor] | 0 |
| TrEMBL | A0A811NF30 | DUF4833 domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS15532 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Sporobolus alterniflorus | 18 | Chr01G004110, Chr01G022620, Chr01G029460, Chr02G015880 ... |