Basic Information
Locus ID:
Chr23G005390
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 4080354 | 4082949 | + | Chr23G005390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 33 | 119 | 5.3E-7 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 219 | 473 | 3.6E-93 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 21 | 134 | 4.94E-14 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 22 | 155 | 2.7E-10 | IPR011333 |
| SMART | SM00225 | BTB_4 | 32 | 139 | 3.6E-6 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 32 | 103 | 10.985188 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 219 | 497 | 92.677765 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 613 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 596 | 633 | - | - |
| Coils | Coil | Coil | 555 | 575 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_025825444.1 | BTB/POZ domain-containing protein At5g03250-like [Panicum hallii] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TZF6 | NPH3 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_39811 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology