Basic Information
Locus ID:
Chr23G005070
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 3875216 | 3882255 | - | Chr23G005070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 883 | 1025 | 7.46975E-53 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 370 | 681 | 4.53775E-78 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 382 | 758 | 2.3E-68 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 916 | 1015 | 2.9E-13 | IPR001650 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 797 | 833 | 1.7E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 790 | 840 | 1.08E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 689 | 1072 | 1.27E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 341 | 681 | 2.53E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 470 | 694 | 9.1E-41 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 696 | 1072 | 2.5E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 341 | 432 | 2.3E-12 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 787 | 847 | 1.2E-10 | IPR013083 |
| SMART | SM00490 | helicmild6 | 932 | 1015 | 4.8E-16 | IPR001650 |
| SMART | SM00487 | ultradead3 | 366 | 662 | 2.5E-21 | IPR014001 |
| SMART | SM00184 | ring_2 | 797 | 835 | 3.2E-5 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 443 | 643 | 13.495598 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 797 | 833 | 10.895954 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 904 | 1068 | 13.49159 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 812 | 821 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 40 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_025824278.1 | helicase-like transcription factor CHR28 [Panicum hallii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6PXE4 | Putative ATP-dependent helicase C17A2.12-like OS=Panicum miliaceum OX=4540 GN=C2845_PM16G20830 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology