Basic Information
Locus ID:
Chr23G004810
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
meprin and TRAF homology
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 3720893 | 3721674 | + | Chr23G004810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 25 | 125 | 5.31105E-16 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 130 | 195 | 8.0E-17 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 24 | 127 | 1.34E-21 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 124 | 195 | 2.08E-20 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 142 | 204 | 9.6E-16 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 22 | 141 | 5.1E-6 | IPR008974 |
| SMART | SM00225 | BTB_4 | 137 | 212 | 5.9E-4 | IPR000210 |
| SMART | SM00061 | math_3 | 28 | 130 | 9.7E-4 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 23 | 153 | 15.098055 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 137 | 195 | 15.452499 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.1 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_021319853.1 | BTB/POZ and MATH domain-containing protein 2 [Sorghum bicolor] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1Z5RF34 | Speckle-type POZ protein OS=Sorghum bicolor OX=4558 GN=SORBI_3006G222000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology