Basic Information
Locus ID:
Chr23G003050
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
ABC transporter C family member 9
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 2189393 | 2197273 | + | Chr23G003050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1286 | 1506 | 6.02341E-121 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 342 | 628 | 5.48314E-100 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 969 | 1263 | 1.62039E-94 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 654 | 854 | 3.17784E-108 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 344 | 607 | 3.0E-25 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 981 | 1215 | 8.6E-34 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1305 | 1453 | 2.1E-27 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 672 | 806 | 1.8E-18 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 649 | 871 | 4.17E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1280 | 1515 | 2.47E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 970 | 1270 | 8.5E-53 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 336 | 636 | 4.97E-32 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 309 | 637 | 6.9E-47 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 933 | 1269 | 1.1E-59 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 664 | 905 | 1.6E-68 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1271 | 1524 | 4.5E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 681 | 854 | 5.8E-9 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1314 | 1507 | 1.9E-9 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 971 | 1251 | 37.49371 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 654 | 877 | 22.028923 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 344 | 620 | 33.650978 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1290 | 1522 | 16.513411 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 779 | 793 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 945 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 926 | 945 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_025823256.1 | putative ABC transporter C family member 15 [Panicum hallii] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A3L6PZ74 | Putative ABC transporter C family member 15 OS=Panicum miliaceum OX=4540 GN=C2845_PM16G18130 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology