Basic Information
Locus ID:
Chr23G002220
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 1612487 | 1616983 | - | Chr23G002220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01699 | Sodium/calcium exchanger protein | 266 | 404 | 3.3E-21 | IPR004837 |
| Pfam | PF01699 | Sodium/calcium exchanger protein | 75 | 230 | 5.0E-20 | IPR004837 |
| Gene3D | G3DSA:1.20.1420.30 | - | 104 | 242 | 6.4E-15 | IPR044880 |
| Gene3D | G3DSA:1.20.1420.30 | - | 251 | 408 | 3.2E-19 | IPR044880 |
| TIGRFAM | TIGR00378 | cax: calcium/proton exchanger | 56 | 407 | 2.5E-105 | IPR004798 |
| TIGRFAM | TIGR00846 | caca2: calcium/proton exchanger | 45 | 407 | 1.4E-118 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13320.1 | cation exchanger 2. low affinity calcium antiporter CAX2 | 0 |
| RefSeq | XP_012700227.1 | vacuolar cation/proton exchanger 3 isoform X2 [Setaria italica] | 0 |
| Q6K1C4 | Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica OX=39947 GN=CAX3 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9TYD9 | Vacuolar cation/proton exchanger OS=Eragrostis curvula OX=38414 GN=EJB05_39958 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology