Basic Information
Locus ID:
Chr23G001910
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
BTB/POZ domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000023 | 1334179 | 1335796 | - | Chr23G001910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 19 | 151 | 4.17041E-20 | IPR002083 |
| CDD | cd14733 | BACK | 300 | 329 | 0.00979424 | - |
| Pfam | PF00651 | BTB/POZ domain | 179 | 297 | 1.0E-14 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 167 | 297 | 1.14E-18 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 16 | 154 | 3.92E-23 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 16 | 151 | 7.5E-22 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 152 | 329 | 2.3E-34 | IPR011333 |
| SMART | SM00225 | BTB_4 | 184 | 299 | 1.3E-11 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 184 | 262 | 12.474292 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 17 | 148 | 17.066906 | IPR002083 |
| Coils | Coil | Coil | 316 | 336 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G43700.3 | - | 0 |
| RefSeq | XP_025825460.1 | BTB/POZ and MATH domain-containing protein 1-like [Panicum hallii] | 0 |
| A1L4W5 | BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=BPM6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6PTH7 | BTB/POZ and MATH domain-containing protein 1-like OS=Panicum miliaceum OX=4540 GN=C2845_PM16G22750 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0300840, gene-QOZ80_4BG0331550 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.2HG0199930.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_047063, gene-QYE76_055297, gene-QYE76_060667 ... |
| Poaceae | Oryza coarctata | 2 | Oco07G018090, Oco08G017470 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g56460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G267800 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr10G016540, Chr23G001910, Chr26G017400 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G823800, Tel2E01G845000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG070360, gene_TRIDC2BG076060 |
| Poaceae | Triticum aestivum | 5 | TraesCS2A02G500000.1.cds1, TraesCS2B02G513200.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-24472, nbis-gene-6092 |