Basic Information
Locus ID:
Chr22G015720
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000022 | 37909917 | 37926899 | + | Chr22G015720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14137 | STKc_GSK3 | 1 | 171 | 2.79925E-125 | IPR039192 |
| Pfam | PF00069 | Protein kinase domain | 1 | 165 | 9.3E-46 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 171 | 5.26E-56 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 35 | 171 | 2.1E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1 | 34 | 2.9E-8 | - |
| SMART | SM00220 | serkin_6 | 1 | 171 | 1.1E-18 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 171 | 32.032604 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 76 | 88 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26751.1 | shaggy-related kinase 11. encodes a SHAGGY-related kinase involved in meristem organization. | 0 |
| RefSeq | XP_012700415.1 | shaggy-related protein kinase alpha isoform X2 [Setaria italica] | 0 |
| P43288 | Shaggy-related protein kinase alpha OS=Arabidopsis thaliana OX=3702 GN=ASK1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A3L6RDY3 | non-specific serine/threonine protein kinase OS=Panicum miliaceum OX=4540 GN=C2845_PM06G07950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg47968 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2BG0006720 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2063.V1.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr22G015720 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003968, gene-LOC107030055 |