Basic Information
Locus ID:
Chr22G012210
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000022 | 27897864 | 27914908 | + | Chr22G012210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 78 | 116 | 4.34171E-14 | - |
| CDD | cd03829 | Sina | 178 | 306 | 6.16041E-67 | - |
| Pfam | PF03145 | Seven in absentia protein family | 157 | 305 | 1.1E-54 | IPR018121 |
| SUPERFAMILY | SSF57850 | RING/U-box | 78 | 121 | 5.3E-6 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 133 | 309 | 5.89E-37 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 168 | 3.2E-7 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 169 | 305 | 1.0E-37 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 80 | 116 | 9.346889 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | NP_001131412.1 | putative seven in absentia domain family protein [Zea mays] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | B4FCG7 | RING-type E3 ubiquitin transferase OS=Zea mays OX=4577 GN=100192741 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology