Basic Information
Locus ID:
Chr22G008670
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000022 | 11767121 | 11768337 | - | Chr22G008670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 126 | 186 | 4.0E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 33 | 71 | 2.7E-5 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 42 | 372 | 2.04E-46 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 217 | 378 | 1.9E-21 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 216 | 7.5E-38 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 151 | 174 | 7.87367 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 241 | 254 | 1.9E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 152 | 165 | 1.9E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_002439784.1 | probable LRR receptor-like serine/threonine-protein kinase IRK [Sorghum bicolor] | 0 |
| TrEMBL | A0A0A9CU75 | LRRNT_2 domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology