Basic Information
Locus ID:
Chr22G008620
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Chitinase class I
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000022 | 11675568 | 11676903 | - | Chr22G008620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06921 | ChtBD1_GH19_hevein | 32 | 70 | 1.06916E-18 | - |
| CDD | cd00325 | chitinase_GH19 | 102 | 333 | 7.75773E-113 | - |
| Pfam | PF00187 | Chitin recognition protein | 33 | 70 | 3.7E-12 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 101 | 333 | 2.5E-126 | IPR000726 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 33 | 78 | 4.71E-12 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 98 | 340 | 2.39E-106 | IPR023346 |
| Gene3D | G3DSA:1.10.530.10 | - | 106 | 339 | 5.8E-118 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 31 | 73 | 1.1E-16 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 185 | 242 | 5.8E-118 | - |
| SMART | SM00270 | ChitinBD_3 | 33 | 70 | 2.1E-16 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 340 | 1.4E-124 | IPR016283 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 23 | 5.0 | - |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 31 | 72 | 11.010142 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 43 | 62 | - | IPR018371 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 119 | 141 | - | IPR000726 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 246 | 256 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 56 | 63 | 2.4E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 49 | 56 | 2.4E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 41 | 49 | 2.4E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | NP_001150560.1 | Chitinase 2 precursor [Zea mays] | 0 |
| Q688M5 | Chitinase 9 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht9 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9RZ79 | chitinase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology