Basic Information
Locus ID:
Chr22G007220
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000022 | 8527529 | 8529652 | - | Chr22G007220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 32 | 73 | 2.24722E-23 | - |
| Pfam | PF04564 | U-box domain | 29 | 92 | 7.8E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 26 | 93 | 2.24E-24 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 28 | 97 | 3.1E-24 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 31 | 94 | 7.7E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 27 | 101 | 31.934744 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18710.1 | plant U-box 29. Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. | 0 |
| RefSeq | XP_004961944.1 | U-box domain-containing protein 27 [Setaria italica] | 0 |
| Q9LSA6 | U-box domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=PUB29 PE=1 SV=1 | 0 | |
| TrEMBL | K3Z650 | U-box domain-containing protein OS=Setaria italica OX=4555 GN=101754698 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.751.V1.1 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.2285, BH05.2393, CH05.2483 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0371690, gene-QOZ80_5BG0419120 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0075150.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_014501 |
| Poaceae | Oryza coarctata | 1 | Oco09G010700 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g36360.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G159000 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr12G018370, Chr18G010420, Chr22G007220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G447300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG040810, gene_TRIDC1BG046460 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G274800.1.cds1, TraesCS1B02G284200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb288830_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-14048, nbis-gene-55990 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27121 |