Basic Information
Locus ID:
Chr22G006240
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000022 | 6320346 | 6330051 | + | Chr22G006240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1123 | 1513 | 1.25797E-105 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1169 | 1515 | 6.9E-79 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 115 | 537 | 5.04E-32 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1119 | 1508 | 1.09E-93 | IPR035983 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1397 | 1513 | 5.6E-34 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1067 | 1286 | 7.2E-37 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 108 | 545 | 1.1E-44 | IPR011989 |
| SMART | SM00119 | hect_3 | 1132 | 1515 | 1.8E-93 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1135 | 1515 | 62.039619 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 845 | 879 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 824 | 839 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 812 | 879 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 0 |
| RefSeq | XP_039837940.1 | E3 ubiquitin-protein ligase UPL4-like [Panicum virgatum] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9U7X4 | HECT-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_35894 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology