Basic Information
Locus ID:
Chr22G005980
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000022 | 5960610 | 5962817 | - | Chr22G005980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 406 | 588 | 1.44187E-89 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 47 | 208 | 2.78137E-90 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 241 | 358 | 7.1E-22 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 44 | 211 | 3.0E-34 | IPR012001 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 451 | 576 | 3.1E-15 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 220 | 7.43E-43 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 230 | 383 | 3.02E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 406 | 602 | 2.68E-43 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 400 | 587 | 3.1E-58 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 230 | 393 | 1.2E-41 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 41 | 217 | 2.0E-59 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 38 | 600 | 2.1E-218 | IPR012110 |
| Coils | Coil | Coil | 549 | 569 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_004961783.1 | pyruvate decarboxylase 1 [Setaria italica] | 0 |
| P28516 | Pyruvate decarboxylase 1 OS=Zea mays OX=4577 GN=PDC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9U840 | pyruvate decarboxylase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_35927 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology