Basic Information
Locus ID:
Chr22G004290
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000022 | 3743268 | 3747701 | - | Chr22G004290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 450 | 576 | 2.49443E-41 | IPR033734 |
| CDD | cd09612 | Jacalin | 22 | 152 | 6.34765E-44 | IPR033734 |
| CDD | cd09612 | Jacalin | 258 | 388 | 3.48979E-42 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 258 | 388 | 2.4E-28 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 22 | 152 | 1.1E-29 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 447 | 576 | 1.1E-28 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 433 | 576 | 1.44E-40 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 11 | 151 | 7.85E-43 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 247 | 387 | 1.96E-40 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 2 | 152 | 4.4E-56 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 238 | 388 | 5.8E-49 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 429 | 576 | 1.6E-49 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 258 | 389 | 4.1E-35 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 22 | 153 | 1.9E-37 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 447 | 577 | 1.0E-38 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 247 | 389 | 47.025249 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 11 | 153 | 49.942181 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 436 | 577 | 49.58577 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.3 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_025805904.1 | LOW QUALITY PROTEIN: jacalin-related lectin 3-like [Panicum hallii] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UAV3 | Jacalin-type lectin domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_36873 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology