Basic Information
Locus ID:
Chr22G002090
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000022 | 1538502 | 1546833 | - | Chr22G002090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 636 | 795 | 2.41557E-24 | - |
| CDD | cd12108 | Hr-like | 291 | 419 | 8.08706E-19 | - |
| CDD | cd12108 | Hr-like | 36 | 162 | 5.36324E-29 | - |
| Pfam | PF05495 | CHY zinc finger | 978 | 1053 | 2.4E-18 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 39 | 164 | 8.2E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 288 | 421 | 9.0E-10 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 634 | 796 | 4.4E-8 | IPR012312 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1044 | 1099 | 1.44E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 970 | 1034 | 1.83E-18 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1101 | 1142 | 1.1E-5 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 630 | 844 | 1.0E-24 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 286 | 436 | 1.8E-18 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 31 | 182 | 1.8E-32 | - |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 971 | 1040 | 25.751575 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1043 | 1106 | 30.091152 | IPR017921 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 567 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 883 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 885 | - | - |
| Coils | Coil | Coil | 396 | 416 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_004961317.1 | zinc finger protein BRUTUS isoform X2 [Setaria italica] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9U9Z4 | Zinc finger protein BRUTUS (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_36583 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology