halophFGD

Basic Information

Locus ID: Chr22G002000

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: Guanine nucleotide-binding protein subunit beta-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000022	1464036	1465975	+	Chr22G002000

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	8	322	1.6671E-87	-
Pfam	PF00400	WD domain, G-beta repeat	63	99	2.7E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	240	273	3.1E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	197	233	9.3E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	8	45	1.9E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	158	191	6.3E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	105	141	9.6E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	298	321	0.0015	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	5	321	1.14E-73	IPR036322
Gene3D	G3DSA:2.130.10.10	-	6	326	9.7E-130	IPR015943
SMART	SM00320	WD40_4	236	273	0.0033	IPR001680
SMART	SM00320	WD40_4	194	233	3.5E-9	IPR001680
SMART	SM00320	WD40_4	143	191	9.7E-8	IPR001680
SMART	SM00320	WD40_4	283	322	0.13	IPR001680
SMART	SM00320	WD40_4	5	45	1.0E-5	IPR001680
SMART	SM00320	WD40_4	102	141	2.7E-9	IPR001680
SMART	SM00320	WD40_4	60	99	2.3E-6	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	109	141	14.384962	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	298	324	9.606159	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	67	108	15.186998	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	12	48	11.410742	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	67	103	11.945589	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	157	194	10.891048	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	109	141	11.89286	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	201	242	15.086744	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	12	48	9.54651	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	201	238	11.602863	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	157	200	13.516088	IPR001680
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	32	46	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	86	100	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	178	192	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	220	234	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	86	100	1.8E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	128	142	1.8E-8	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	178	192	1.8E-8	IPR020472

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14753 (guanine nucleotide-binding protein subunit beta-2-like 1 protein)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G48630.1	receptor for activated C kinase 1B. Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1B has no phenotype on its own and probably acts redundantly with RACK1A and RACK1C.
RefSeq	XP_004961307.1	guanine nucleotide-binding protein subunit beta-like protein A [Setaria italica]
Swiss-Prot	P49027	Small ribosomal subunit protein RACK1z OS=Oryza sativa subsp. japonica OX=39947 GN=RACK1A PE=1 SV=1
TrEMBL	A0A5J9U9X4	WD_REPEATS_REGION domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_36563 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg13319, jg13320, jg27000
Aizoaceae	Mesembryanthemum crystallinum	2	gene_19983, gene_23890
Amaranthaceae	Atriplex hortensis	1	Ah002270
Amaranthaceae	Beta vulgaris	1	BVRB_5g111970
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg32204, Sbi_jg57196
Amaranthaceae	Salicornia europaea	1	Seu_jg24934
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00022192
Amaranthaceae	Suaeda glauca	2	Sgl53978, Sgl59303
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000004264, gene:ENSEOMG00000021259 ... gene:ENSEOMG00000024746
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.5AG0014830, CQ.Regalona.r1.5BG0015800
Anacardiaceae	Pistacia vera	1	pistato.v30150310
Apiaceae	Apium graveolens	2	Ag11G03770, Ag5G00067
Arecaceae	Cocos nucifera	5	COCNU_02G005670, COCNU_02G005690, COCNU_06G008140 ... scaffold001198G000060, scaffold012197G000050
Arecaceae	Phoenix dactylifera	5	gene-LOC103716866, gene-LOC103719002, gene-LOC103722987 ... gene-LOC103723475, gene-LOC120110522
Asparagaceae	Asparagus officinalis	2	AsparagusV1_01.3204.V1.1, AsparagusV1_05.750.V1.1
Asteraceae	Flaveria trinervia	2	Ftri17G23993, Ftri6G09016
Brassicaceae	Arabidopsis thaliana	3	AT1G18080.1, AT1G48630.1, AT3G18130.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10008183m.g.v1.0, Thhalv10011646m.g.v1.0 ... Thhalv10021128m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g16100.v2.2, Sp1g35600.v2.2, Sp3g16240.v2.2
Brassicaceae	Brassica nigra	6	BniB01g046490.2N, BniB03g007440.2N, BniB03g027900.2N ... BniB04g032580.2N, BniB04g062020.2N, BniB07g007110.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq03G2865
Casuarinaceae	Casuarina glauca	1	Cgl03G3013
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno11g02150
Dunaliellaceae	Dunaliella salina	1	Dusal.0241s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g00270
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG10.268
Plantaginaceae	Plantago ovata	3	Pov_00018619, Pov_00033244, Pov_00033291
Plumbaginaceae	Limonium bicolor	4	Lb3G16516, Lb3G16524, Lb5G29571, Lb6G29907
Poaceae	Echinochloa crus-galli	6	AH02.2797, AH05.1476, BH02.2881, BH05.1645, CH02.3653 ... CH05.1854
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0029020, gene-QOZ80_1BG0079240 ... gene-QOZ80_5AG0364080, gene-QOZ80_5BG0412180
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0084340.1, HORVU.MOREX.r3.3HG0280990.1
Poaceae	Lolium multiflorum	2	gene-QYE76_015641, gene-QYE76_054631
Poaceae	Oryza coarctata	4	Oco01G017580, Oco02G017820, Oco09G016160, Oco10G015950
Poaceae	Oryza sativa	2	LOC_Os01g49290.1, LOC_Os05g47890.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G234800, gene-BS78_09G227600
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0503641, Pt_Chr0602392, Pt_Chr0602403
Poaceae	Sporobolus alterniflorus	8	Chr01G015230, Chr02G012360, Chr03G013770, Chr05G021280 ... Chr06G022680, Chr12G021620, Chr18G014700, Chr22G002000
Poaceae	Thinopyrum elongatum	2	Tel1E01G615800, Tel3E01G441700
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG055510, gene_TRIDC1BG063850 ... gene_TRIDC3AG039410, gene_TRIDC3BG044470
Poaceae	Triticum aestivum	6	TraesCS1A02G378000.1, TraesCS1B02G398800.1 ... TraesCS1D02G385000.1, TraesCS3A02G263900.1, TraesCS3B02G297300.1, TraesCS3D02G264000.1
Poaceae	Zea mays	2	Zm00001eb294990_P001, Zm00001eb342960_P001
Poaceae	Zoysia japonica	4	nbis-gene-12605, nbis-gene-13743, nbis-gene-24932 ... nbis-gene-26144
Poaceae	Zoysia macrostachya	5	Zma_g10901, Zma_g10902, Zma_g27334, Zma_g28749, Zma_g8453
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.2251, evm.TU.LG05.754, evm.TU.LG14.1424 ... evm.TU.LG25.572
Posidoniaceae	Posidonia oceanica	2	gene.Posoc03g19330, gene.Posoc04g03680
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60404.5, evm.TU.Scaffold_11_RagTag.642 ... evm.TU.Scaffold_4_RagTag.715
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-14300, nbisL1-mrna-28642
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-3231, nbisL1-mrna-4299
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-12332, nbisL1-mrna-1651
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000061l.4
Rhizophoraceae	Kandelia obovata	2	Maker00000606, Maker00008692
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14440, nbisL1-mrna-948
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-19212, nbisL1-mrna-8389
Salicaceae	Populus euphratica	2	populus_peu28285, populus_peu29736
Solanaceae	Lycium barbarum	2	gene-LOC132599878, gene-LOC132633235
Solanaceae	Solanum chilense	2	SOLCI000423000, SOLCI006758900
Solanaceae	Solanum pennellii	3	gene-LOC107007696, gene-LOC107014559, gene-LOC107023263
Tamaricaceae	Reaumuria soongarica	1	gene_12652
Tamaricaceae	Tamarix chinensis	2	TC05G1040, TC09G1699
Zosteraceae	Zostera marina	2	Zosma04g05450.v3.1, Zosma05g32250.v3.1