Basic Information
Locus ID:
Chr22G000310
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000022 | 241768 | 246586 | + | Chr22G000310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 536 | 669 | 5.28386E-23 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 538 | 668 | 8.7E-38 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 692 | 734 | 1.3E-11 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 114 | 352 | 5.8E-5 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 497 | 735 | 1.66E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 496 | 669 | 1.7E-95 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 670 | 741 | 1.7E-95 | - |
| SMART | SM00382 | AAA_5 | 534 | 671 | 5.5E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 641 | 660 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 433 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 751 | 772 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 776 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 730 | 744 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 218 | - | - |
| Coils | Coil | Coil | 722 | 746 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52882.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_004961073.1 | putative cell division cycle ATPase [Setaria italica] | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9U955 | AAA domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_36316 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology