Basic Information
Locus ID:
Chr22G000050
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
DYW family of nucleic acid deaminases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000022 | 59731 | 61683 | + | Chr22G000050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 256 | 283 | 4.7E-7 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 430 | 515 | 3.2E-31 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 162 | 394 | 1.9E-27 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 256 | 282 | 1.8E-5 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 253 | 287 | 9.711769 | IPR002885 |
| PRINTS | PR01217 | Proline rich extensin signature | 104 | 116 | 3.1E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 59 | 71 | 3.1E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 79 | 95 | 3.1E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 124 | 145 | 3.1E-9 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 148 | 164 | 3.1E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 41 | 95 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 95 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021311222.1 | pentatricopeptide repeat-containing protein At2g15690 [Sorghum bicolor] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9SJ45 | DYW_deaminase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_52612 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology