Basic Information
Locus ID:
Chr21G014910
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000021 | 41913185 | 41913791 | - | Chr21G014910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 70 | 112 | 6.08358E-17 | - |
| Pfam | PF13639 | Ring finger domain | 69 | 112 | 9.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 69 | 118 | 4.16E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 48 | 117 | 2.6E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 69 | 112 | 8.9E-5 | IPR011016 |
| SMART | SM00184 | ring_2 | 70 | 111 | 4.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 70 | 112 | 13.13841 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G04240.1 | RING/U-box superfamily protein. Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. Transcrips levels are induced by DELLA proteins and repressed by gibberellic acid. Involved in ABA metabolism. | 0 |
| RefSeq | XP_040383650.1 | probable E3 ubiquitin-protein ligase XERICO [Oryza brachyantha] | 0 |
| Q9SI09 | Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana OX=3702 GN=XERICO PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9VI24 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology