Basic Information
Locus ID:
Chr21G014480
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
DNA binding domain with preference for A/T rich regions
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000021 | 41518270 | 41520167 | + | Chr21G014480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06257 | DnaJ | 72 | 132 | 1.55214E-4 | IPR001623 |
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 65 | 140 | 2.3E-6 | IPR036869 |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 50 | 162 | 5.2E-6 | IPR036869 |
| ProSiteProfiles | PS50076 | dnaJ domain profile. | 72 | 143 | 8.931517 | IPR001623 |
| PRINTS | PR01217 | Proline rich extensin signature | 228 | 249 | 2.2E-15 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 189 | 205 | 2.2E-15 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 216 | 228 | 2.2E-15 | - |
| PRINTS | PR01217 | Proline rich extensin signature | 173 | 185 | 2.2E-15 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 499 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 220 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 499 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004957058.1 | proline-rich extensin-like protein EPR1 [Setaria italica] | 0 |
| TrEMBL | A0A0A9RS63 | J domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology