halophFGD

Basic Information

Locus ID: Chr21G012250

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: Belongs to the protein kinase superfamily

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000021	38477085	38493142	-	Chr21G012250

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	98	156	4.68E-7	IPR011009
Gene3D	G3DSA:3.30.200.20	Phosphorylase Kinase; domain 1	94	144	1.5E-8	-
MobiDBLite	mobidb-lite	consensus disorder prediction	85	104	-	-

KEGG Pathway

KO Term:

K04733 (interleukin-1 receptor-associated kinase 4 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) map04621 (NOD-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G24030.5	-
RefSeq	XP_025802179.1	probable serine/threonine-protein kinase PBL28 [Panicum hallii]
Swiss-Prot	Q84M95	Probable serine/threonine-protein kinase PBL28 OS=Arabidopsis thaliana OX=3702 GN=PBL28 PE=2 SV=1
TrEMBL	A0A8T0W4B9	Protein kinase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2KG315800 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Sporobolus alterniflorus	18	Chr01G004110, Chr01G022620, Chr01G029460, Chr02G015880 ... Chr03G010510, Chr03G011210, Chr05G012140, Chr08G011960, Chr12G017580, Chr15G020620, Chr20G007280, Chr21G012250, Chr23G005430, Chr25G012960, Chr26G008340, Chr26G011960, Chr27G003840, Chr30G007210