Basic Information
Locus ID:
Chr21G011790
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000021 | 37649282 | 37652872 | + | Chr21G011790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 19 | 243 | 7.2E-81 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 130 | 233 | 6.87E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 131 | 246 | 2.1E-41 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 136 | 234 | 26.410748 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 75 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 95 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 0 |
| RefSeq | XP_002438435.1 | auxin-responsive protein IAA21 isoform X1 [Sorghum bicolor] | 0 |
| Q5Z749 | Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TCF0 | Auxin-responsive protein OS=Eragrostis curvula OX=38414 GN=EJB05_42440 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology