Basic Information
Locus ID:
Chr21G011510
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000021 | 37101231 | 37101788 | - | Chr21G011510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 123 | 168 | 3.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 174 | 1.89E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 175 | 2.8E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 124 | 167 | 1.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 124 | 168 | 11.722122 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_004967067.1 | RING-H2 finger protein ATL30 [Setaria italica] | 0 |
| TrEMBL | A0A5J9TDC1 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42397 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0010s00026.v1.0 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0530200, gene-QOZ80_6BG0484110 |
| Poaceae | Oryza coarctata | 1 | Oco11G010410 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr14G011340, Chr21G011510 |
| Poaceae | Triticum aestivum | 1 | TraesCS7B02G235500.1.cds1 |