Basic Information
Locus ID:
Chr21G011420
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
CPK24
Description:
EF hand
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000021 | 36947608 | 36958262 | + | Chr21G011420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 468 | 527 | 6.69627E-18 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 83 | 345 | 2.36931E-117 | - |
| Pfam | PF13499 | EF-hand domain pair | 467 | 526 | 3.8E-13 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 396 | 453 | 6.6E-8 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 84 | 346 | 6.4E-64 | IPR000719 |
| SUPERFAMILY | SSF47473 | EF-hand | 375 | 541 | 9.16E-43 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 79 | 363 | 3.1E-75 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 174 | 354 | 5.4E-58 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 86 | 173 | 1.3E-20 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 355 | 528 | 4.3E-49 | - |
| SMART | SM00054 | efh_1 | 465 | 493 | 0.0013 | IPR002048 |
| SMART | SM00054 | efh_1 | 429 | 457 | 1.2 | IPR002048 |
| SMART | SM00220 | serkin_6 | 84 | 346 | 7.8E-84 | IPR000719 |
| SMART | SM00054 | efh_1 | 393 | 421 | 0.018 | IPR002048 |
| SMART | SM00054 | efh_1 | 501 | 529 | 1.5E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 389 | 424 | 14.457615 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 497 | 532 | 13.788124 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 461 | 496 | 13.202322 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 84 | 346 | 44.315048 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 425 | 460 | 9.464338 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 510 | 522 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 438 | 450 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 474 | 486 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 208 | 220 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 90 | 113 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 402 | 414 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_039821798.1 | calcium-dependent protein kinase 22-like [Panicum virgatum] | 0 |
| Q69IM9 | Calcium-dependent protein kinase 22 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK22 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5J9TC67 | Calcium-dependent protein kinase 24 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_42381 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology