Basic Information
Locus ID:
Chr21G010090
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000021 | 33444499 | 33451813 | - | Chr21G010090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 4 | 65 | 1.1E-23 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 248 | 285 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 162 | 198 | 0.078 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 204 | 241 | 2.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 306 | 341 | 0.019 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 98 | 345 | 4.07E-46 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 361 | 7.5E-112 | IPR015943 |
| SMART | SM00320 | WD40_4 | 109 | 149 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 201 | 241 | 3.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 342 | 0.0066 | IPR001680 |
| SMART | SM00320 | WD40_4 | 245 | 285 | 0.006 | IPR001680 |
| SMART | SM00320 | WD40_4 | 158 | 198 | 0.0049 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 208 | 243 | 8.808332 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 116 | 150 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 309 | 343 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 252 | 287 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 208 | 243 | 10.475033 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 165 | 207 | 10.174269 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 252 | 287 | 9.467419 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 329 | 343 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 272 | 286 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 136 | 150 | 1.8E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 228 | 242 | 1.8E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35050.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase | 0 |
| RefSeq | XP_002460586.1 | histone-binding protein MSI1 homolog [Sorghum bicolor] | 0 |
| O22469 | WD-40 repeat-containing protein MSI3 OS=Arabidopsis thaliana OX=3702 GN=MSI3 PE=1 SV=2 | 0 | |
| TrEMBL | C5X6W6 | CAF1C_H4-bd domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3002G280700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology