halophFGD

Basic Information

Locus ID: Chr21G009600

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: TPL-binding domain in jasmonate signalling

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000021	32010609	32014142	+	Chr21G009600

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF16135	Tify domain binding domain	283	333	5.1E-11	IPR032308
SUPERFAMILY	SSF57903	FYVE/PHD zinc finger	381	436	4.43E-11	IPR011011
SUPERFAMILY	SSF55729	Acyl-CoA N-acyltransferases (Nat)	534	656	2.95E-7	IPR016181
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	381	482	2.7E-15	IPR013083
SMART	SM00249	PHD_3	396	436	1.2E-8	IPR001965
ProSiteProfiles	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	535	681	9.333859	IPR000182
ProSiteProfiles	PS50016	Zinc finger PHD-type profile.	394	438	8.9204	IPR019787
ProSitePatterns	PS01359	Zinc finger PHD-type signature.	397	435	-	IPR019786
MobiDBLite	mobidb-lite	consensus disorder prediction	111	162	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	174	229	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	190	227	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	111	131	-	-
Coils	Coil	Coil	345	365	-	-

Gene Ontology

Molecular Function:

GO:0008080 (N-acetyltransferase activity)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G14980.3	-
RefSeq	XP_039812162.1	uncharacterized protein LOC120675145 [Panicum virgatum]
Swiss-Prot	F4IXE7	Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1
TrEMBL	A0A5J9VNH8	PHD-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_18956 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	8	jg11167, jg12097, jg18123, jg37325, jg38023, jg38243, jg5736 ... jg38246
Aizoaceae	Mesembryanthemum crystallinum	6	gene_11862, gene_13568, gene_14913, gene_15543, gene_5775 ... gene_7506
Amaranthaceae	Atriplex hortensis	7	Ah004094, Ah005421, Ah007839, Ah020430, Ah025066, Ah027817 ... Ah039110
Amaranthaceae	Beta vulgaris	4	BVRB_4g078960, BVRB_4g086070, BVRB_5g119360, BVRB_7g171910
Amaranthaceae	Salicornia bigelovii	18	Sbi_jg1544, Sbi_jg17655, Sbi_jg19208, Sbi_jg19211, Sbi_jg603 ... Sbi_jg24241, Sbi_jg24631, Sbi_jg24632, Sbi_jg30726, Sbi_jg32953, Sbi_jg35001, Sbi_jg37619, Sbi_jg5162, Sbi_jg58538, Sbi_jg62333, Sbi_jg6953, Sbi_jg8067, Sbi_jg8493
Amaranthaceae	Salicornia europaea	7	Seu_jg11955, Seu_jg13120, Seu_jg20100, Seu_jg28410 ... Seu_jg3199, Seu_jg5463, Seu_jg903
Amaranthaceae	Suaeda aralocaspica	6	GOSA_00003387, GOSA_00003919, GOSA_00004974, GOSA_00006758 ... GOSA_00007324, GOSA_00014688
Amaranthaceae	Suaeda glauca	20	Sgl00118, Sgl00304, Sgl05186, Sgl05360, Sgl23290, Sgl24028 ... Sgl28358, Sgl29210, Sgl42847, Sgl47606, Sgl47627, Sgl52475, Sgl55020, Sgl55021, Sgl57791, Sgl60276, Sgl72815, Sgl73910, Sgl76354, Sgl77418
Amaranthaceae	Chenopodium album	16	gene:ENSEOMG00000006464, gene:ENSEOMG00000008295 ... gene:ENSEOMG00000009295, gene:ENSEOMG00000011409, gene:ENSEOMG00000012907, gene:ENSEOMG00000013038, gene:ENSEOMG00000029708, gene:ENSEOMG00000030378, gene:ENSEOMG00000031511, gene:ENSEOMG00000034781, gene:ENSEOMG00000038662, gene:ENSEOMG00000041406, gene:ENSEOMG00000041486, gene:ENSEOMG00000042276, gene:ENSEOMG00000044819, gene:ENSEOMG00000047889
Amaranthaceae	Chenopodium quinoa	9	CQ.Regalona.r1.1AG0016610, CQ.Regalona.r1.3AG0015120 ... CQ.Regalona.r1.3BG0014870, CQ.Regalona.r1.4AG0005420, CQ.Regalona.r1.4AG0018470, CQ.Regalona.r1.4BG0005400, CQ.Regalona.r1.4BG0018970, CQ.Regalona.r1.7AG0004650, CQ.Regalona.r1.9BG0001120
Anacardiaceae	Pistacia vera	10	pistato.v30027010, pistato.v30061250, pistato.v30065120 ... pistato.v30142120, pistato.v30162230, pistato.v30201530, pistato.v30221910, pistato.v30221920, pistato.v30236800, pistato.v30257940
Apiaceae	Apium graveolens	11	Ag10G01832, Ag11G03179, Ag1G00718, Ag2G00010, Ag2G02388 ... Ag5G02500, Ag6G02123, Ag7G00171, Ag8G01596, AgUnG00041, AgUnG01134
Arecaceae	Cocos nucifera	10	COCNU_01G019830, COCNU_02G010250, COCNU_03G000910 ... COCNU_04G003330, COCNU_04G013880, COCNU_04G013890, COCNU_06G020780, COCNU_06G020790, COCNU_11G004140, COCNU_15G002770
Arecaceae	Phoenix dactylifera	8	gene-LOC103702645, gene-LOC103703136, gene-LOC103711112 ... gene-LOC103712121, gene-LOC103712566, gene-LOC103713918, gene-LOC103714273, gene-LOC113462352
Asparagaceae	Asparagus officinalis	7	AsparagusV1_02.277.V1.1, AsparagusV1_03.505.V1.1 ... AsparagusV1_04.2575.V1.1, AsparagusV1_07.687.V1.1, AsparagusV1_08.3414.V1.1, AsparagusV1_09.113.V1.1, AsparagusV1_09.720.V1.1
Asteraceae	Flaveria trinervia	11	Ftri10G02498, Ftri11G31764, Ftri12G04929, Ftri15G26266 ... Ftri15G32066, Ftri3G20401, Ftri3G21382, Ftri4G00552, Ftri4G03364, Ftri7G11657, Ftri7G17336
Brassicaceae	Arabidopsis thaliana	7	AT1G05380.1, AT3G14980.1, AT4G14920.1, AT5G36670.1 ... AT5G36740.1, AT5G58610.1, AT5G63900.1
Brassicaceae	Eutrema salsugineum	6	Thhalv10003533m.g.v1.0, Thhalv10005427m.g.v1.0 ... Thhalv10009713m.g.v1.0, Thhalv10012519m.g.v1.0, Thhalv10019928m.g.v1.0, Thhalv10024261m.g.v1.0
Brassicaceae	Schrenkiella parvula	6	Sp1g04250.v2.2, Sp1g04260.v2.2, Sp2g26960.v2.2 ... Sp3g13180.v2.2, Sp7g05750.v2.2, Sp7g13060.v2.2
Brassicaceae	Brassica nigra	9	BniB01g031240.2N, BniB01g050070.2N, BniB02g038050.2N ... BniB03g035670.2N, BniB05g021200.2N, BniB06g012150.2N, BniB06g045180.2N, BniB07g042580.2N, BniB07g042590.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq01G0926, Ceq06G2101, Ceq08G1857, Ceq09G1347
Casuarinaceae	Casuarina glauca	4	Cgl01G1044, Cgl06G2214, Cgl08G1914, Cgl09G1437
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno04g16630, gene.Cymno05g00760, gene.Cymno11g05670
Dunaliellaceae	Dunaliella salina	3	Dusal.0280s00011.v1.0, Dusal.0330s00008.v1.0 ... Dusal.0545s00006.v1.0
Hydrocharitaceae	Thalassia testudinum	7	gene.Thate01g32540, gene.Thate02g15400, gene.Thate02g18280 ... gene.Thate02g40320, gene.Thate06g02510, gene.Thate08g10540, gene.Thate09g01410
Malvaceae	Hibiscus hamabo Siebold & Zucc.	9	nbisL1-mrna-12073, nbisL1-mrna-12074, nbisL1-mrna-4976 ... nbisL1-mrna-5209, nbisL1-mrna-5970, nbisL1-mrna-8299, nbisL1-mrna-8816, nbisL1-mrna-8817, nbisL1-mrna-8818
Nitrariaceae	Nitraria sibirica	6	evm.TU.LG01.1987, evm.TU.LG02.739, evm.TU.LG04.1088 ... evm.TU.LG05.1493, evm.TU.LG10.593, evm.TU.LG11.1039
Plantaginaceae	Plantago ovata	7	Pov_00016331, Pov_00017841, Pov_00021300, Pov_00021672 ... Pov_00023406, Pov_00025553, Pov_00027447
Plumbaginaceae	Limonium bicolor	10	Lb1G07236, Lb2G13764, Lb3G16391, Lb3G16396, Lb3G20470 ... Lb3G20492, Lb4G23836, Lb4G24783, Lb4G24784, Lb8G36683
Poaceae	Echinochloa crus-galli	21	AH01.3996, AH02.4621, AH03.361, AH03.4147, AH09.1034 ... AH09.2815, BH01.4382, BH01.744, BH02.4680, BH02.4681, BH03.432, BH09.1111, BH09.3047, CH01.4625, CH01.743, CH02.4734, CH03.509, CH07.23, CH09.1248, CH09.3221, Contig309.97
Poaceae	Eleusine coracana subsp. coracana	11	gene-QOZ80_1AG0047840, gene-QOZ80_1BG0097670 ... gene-QOZ80_3AG0216250, gene-QOZ80_3BG0261560, gene-QOZ80_3BG0283930, gene-QOZ80_4AG0298270, gene-QOZ80_4BG0328940, gene-QOZ80_7AG0557450, gene-QOZ80_7AG0582790, gene-QOZ80_7BG0588310, gene-QOZ80_7BG0613920
Poaceae	Hordeum vulgare	8	HORVU.MOREX.r3.2HG0108050.1, HORVU.MOREX.r3.2HG0147280.1 ... HORVU.MOREX.r3.2HG0169040.1, HORVU.MOREX.r3.2HG0217050.1, HORVU.MOREX.r3.3HG0308740.1, HORVU.MOREX.r3.3HG0325990.1, HORVU.MOREX.r3.4HG0384820.1, HORVU.MOREX.r3.5HG0510280.1
Poaceae	Lolium multiflorum	15	gene-QYE76_016649, gene-QYE76_030354, gene-QYE76_038533 ... gene-QYE76_038534, gene-QYE76_038536, gene-QYE76_038538, gene-QYE76_042725, gene-QYE76_042756, gene-QYE76_044071, gene-QYE76_057590, gene-QYE76_057609, gene-QYE76_058641, gene-QYE76_058657, gene-QYE76_061885, gene-QYE76_068795
Poaceae	Oryza coarctata	9	Oco02G031850, Oco05G023490, Oco06G024390, Oco07G006180 ... Oco07G020080, Oco08G006120, Oco08G019450, Oco13G002290, Oco14G002510
Poaceae	Oryza sativa	6	LOC_Os01g73480.1, LOC_Os03g53630.1, LOC_Os04g35430.1 ... LOC_Os04g59510.1, LOC_Os07g07690.1, LOC_Os07g49290.1
Poaceae	Paspalum vaginatum	8	gene-BS78_01G082300, gene-BS78_01G389600 ... gene-BS78_02G048300, gene-BS78_03G296300, gene-BS78_06G026800, gene-BS78_06G100000, gene-BS78_06G295400, gene-BS78_07G006100
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0105088, Pt_Chr0106318, Pt_Chr0303648, Pt_Chr0306880 ... Pt_Chr0600941, Pt_Chr0600942
Poaceae	Sporobolus alterniflorus	26	Chr01G005330, Chr01G031980, Chr04G008660, Chr04G028510 ... Chr05G034380, Chr07G003030, Chr07G023110, Chr07G027480, Chr12G007610, Chr12G037730, Chr14G009500, Chr19G017350, Chr20G013920, Chr21G009600, Chr23G000150, Chr23G012850, Chr24G000650, Chr25G011070, Chr26G006700, Chr26G019050, Chr27G017610, Chr28G001660, Chr29G000410, Chr29G013000, Chr29G013010, Chr29G013020
Poaceae	Thinopyrum elongatum	10	Tel2E01G1045900, Tel2E01G183800, Tel2E01G441900 ... Tel2E01G538000, Tel2E01G538100, Tel3E01G857000, Tel3E01G857100, Tel4E01G346700, Tel5E01G035000, Tel5E01G614600
Poaceae	Triticum dicoccoides	16	gene_TRIDC2AG009430, gene_TRIDC2AG032010 ... gene_TRIDC2AG044280, gene_TRIDC2AG044310, gene_TRIDC2AG082150, gene_TRIDC2BG025930, gene_TRIDC2BG036190, gene_TRIDC2BG046990, gene_TRIDC2BG047000, gene_TRIDC2BG091180, gene_TRIDC3BG066470, gene_TRIDC4AG015160, gene_TRIDC4AG015170, gene_TRIDC4BG033800, gene_TRIDC5AG056450, gene_TRIDC5BG060480
Poaceae	Triticum aestivum	23	TraesCS2A02G085100.1, TraesCS2A02G235700.1 ... TraesCS2A02G305000.1, TraesCS2A02G563500.2, TraesCS2B02G099800.1, TraesCS2B02G257600.3, TraesCS2B02G321800.1, TraesCS2B02G622700.1, TraesCS2D02G083000.1, TraesCS2D02G238100.1, TraesCS2D02G303600.2, TraesCS2D02G571900.2, TraesCS3A02G416700.1, TraesCS3A02G514100.1, TraesCS3B02G451700.2, TraesCS3B02G582800.1, TraesCS3D02G412200.1, TraesCS4A02G109600.1, TraesCS4B02G194600.1, TraesCS4D02G195300.1, TraesCS5A02G386300.1, TraesCS5B02G391200.1, TraesCS5D02G396100.1
Poaceae	Zea mays	10	Zm00001eb013420_P004, Zm00001eb057140_P001 ... Zm00001eb082620_P002, Zm00001eb140130_P001, Zm00001eb214970_P003, Zm00001eb282220_P001, Zm00001eb301070_P001, Zm00001eb367460_P001, Zm00001eb367470_P001, Zm00001eb434470_P001
Poaceae	Zoysia japonica	6	nbis-gene-16139, nbis-gene-23280, nbis-gene-26865 ... nbis-gene-26867, nbis-gene-28083, nbis-gene-37827
Poaceae	Zoysia macrostachya	7	Zma_g11995, Zma_g19718, Zma_g20750, Zma_g2806, Zma_g3841 ... Zma_g489, Zma_g6057
Portulacaceae	Portulaca oleracea	14	evm.TU.LG01.2344, evm.TU.LG02.777, evm.TU.LG03.1777 ... evm.TU.LG04.3197, evm.TU.LG06.1743, evm.TU.LG08.1221, evm.TU.LG09.1950, evm.TU.LG11.1095, evm.TU.LG14.1514, evm.TU.LG14.99, evm.TU.LG16.407, evm.TU.LG19.1060, evm.TU.LG22.131, evm.TU.LG24.1064
Posidoniaceae	Posidonia oceanica	5	gene.Posoc01g01910, gene.Posoc01g36870, gene.Posoc04g12680 ... gene.Posoc05g21530, gene.Posoc07g09880
Rhizophoraceae	Bruguiera sexangula	7	evm.TU.Scaffold_12_RagTag.116, evm.TU.Scaffold_14_RagTag.939 ... evm.TU.Scaffold_16_RagTag.853, evm.TU.Scaffold_3_RagTag.443, evm.TU.Scaffold_6_RagTag.2122, evm.TU.Scaffold_6_RagTag.743, evm.TU.Scaffold_9_RagTag.120
Rhizophoraceae	Carallia pectinifolia	9	nbisL1-mrna-1478, nbisL1-mrna-15951, nbisL1-mrna-17008 ... nbisL1-mrna-17878, nbisL1-mrna-21288, nbisL1-mrna-21771, nbisL1-mrna-21794, nbisL1-mrna-30075, nbisL1-mrna-9256
Rhizophoraceae	Ceriops tagal	7	nbisL1-mrna-13358, nbisL1-mrna-15477, nbisL1-mrna-15670 ... nbisL1-mrna-16793, nbisL1-mrna-19895, nbisL1-mrna-2761, nbisL1-mrna-6493
Rhizophoraceae	Ceriops zippeliana	11	nbisL1-mrna-11700, nbisL1-mrna-11701, nbisL1-mrna-11702 ... nbisL1-mrna-16305, nbisL1-mrna-17245, nbisL1-mrna-18387, nbisL1-mrna-19427, nbisL1-mrna-19428, nbisL1-mrna-6171, nbisL1-mrna-620, nbisL1-mrna-7567
Rhizophoraceae	Kandelia candel	9	add.evm.TU.utg000011l.539, evm.TU.utg000003l.519 ... evm.TU.utg000003l.90, evm.TU.utg000011l.450, evm.TU.utg000015l.556, evm.TU.utg000019l.955, evm.TU.utg000022l.66, evm.TU.utg000025l.113, evm.TU.utg000027l.497
Rhizophoraceae	Kandelia obovata	5	Maker00007335, Maker00009855, Maker00012927, Maker00015302 ... Maker00017634
Rhizophoraceae	Rhizophora apiculata	8	nbisL1-mrna-15319, nbisL1-mrna-18917, nbisL1-mrna-20183 ... nbisL1-mrna-23061, nbisL1-mrna-4462, nbisL1-mrna-63, nbisL1-mrna-6355, nbisL1-mrna-6722
Rhizophoraceae	Rhizophora mangle	9	nbisL1-mrna-10294, nbisL1-mrna-11650, nbisL1-mrna-2126 ... nbisL1-mrna-21663, nbisL1-mrna-2993, nbisL1-mrna-3469, nbisL1-mrna-5131, nbisL1-mrna-9159, nbisL1-mrna-9161
Salicaceae	Populus euphratica	10	populus_peu00585, populus_peu03049, populus_peu07380 ... populus_peu15055, populus_peu21384, populus_peu32058, populus_peu32718, populus_peu32719, populus_peu36058, populus_peu36059
Solanaceae	Lycium barbarum	6	gene-LOC132606277, gene-LOC132610879, gene-LOC132610929 ... gene-LOC132616835, gene-LOC132618192, gene-LOC132630954
Solanaceae	Solanum chilense	6	SOLCI000977900, SOLCI001721600, SOLCI002469800 ... SOLCI003102600, SOLCI004743900, SOLCI006097100
Solanaceae	Solanum pennellii	8	gene-LOC107012432, gene-LOC107014957, gene-LOC107023319 ... gene-LOC107025939, gene-LOC107028255, gene-LOC107031317, gene-LOC107031373, gene-LOC107031410
Tamaricaceae	Reaumuria soongarica	8	MSTRG.6890_chr04_-, STRG.16833_chr09_-, STRG.175_chr01_+ ... STRG.20421_chr09_+, STRG.21988_chr08_+, STRG.4031_chr02_-, gene_3003, gene_7201
Tamaricaceae	Tamarix chinensis	8	TC01G0796, TC02G2221, TC05G2155, TC07G2672, TC07G2674 ... TC07G2675, TC11G1221, TC12G1376
Zosteraceae	Zostera marina	2	Zosma01g42460.v3.1, Zosma02g16670.v3.1