Basic Information
Locus ID:
Chr21G004710
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000021 | 7108352 | 7118798 | + | Chr21G004710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.58801E-22 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 3.3E-15 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 165 | 203 | 5.0E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 283 | 338 | 1.6E-19 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 365 | 400 | 1.7E-9 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 350 | 407 | 1.32E-12 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 161 | 218 | 9.01E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 1.04E-19 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 279 | 340 | 6.8E-19 | IPR036353 |
| Gene3D | G3DSA:1.10.10.540 | - | 272 | 339 | 2.3E-25 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 1.1E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 158 | 208 | 3.6E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 357 | 404 | 2.4E-21 | - |
| SMART | SM00165 | uba_6 | 165 | 205 | 1.1E-4 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 7.5E-17 | IPR000626 |
| SMART | SM00727 | CBM | 279 | 324 | 1.7E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 365 | 402 | 1.1E-8 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 408 | 4.6E-107 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 363 | 403 | 14.209594 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 163 | 206 | 12.402311 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.105453 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 376 | 390 | 8.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 309 | 331 | 8.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 359 | 375 | 8.8E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 391 | 406 | 8.8E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 135 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 245 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_025813528.1 | ubiquitin receptor RAD23d-like [Panicum hallii] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A2S3HL08 | Ubiquitin receptor RAD23 OS=Panicum hallii OX=206008 GN=PAHAL_4G281300 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology