Basic Information
Locus ID:
Chr21G002320
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000021 | 2042037 | 2043372 | + | Chr21G002320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 127 | 170 | 2.08806E-21 | - |
| Pfam | PF13639 | Ring finger domain | 127 | 170 | 1.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 123 | 175 | 3.06E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 99 | 179 | 6.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 128 | 169 | 1.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 128 | 170 | 12.563043 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 281 | 295 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_002436629.1 | E3 ubiquitin-protein ligase EL5 [Sorghum bicolor] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | K4LJW5 | Ring-H2 zinc finger protein OS=Coix lacryma-jobi OX=4505 GN=znf PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology