Basic Information
Locus ID:
Chr21G000720
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000021 | 484880 | 500498 | + | Chr21G000720 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 29 | 306 | 4.48436E-61 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 142 | 180 | 0.0093 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 328 | 695 | 1.4E-133 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 100 | 136 | 4.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 186 | 224 | 2.0E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 229 | 265 | 5.8E-8 | IPR001680 |
| SUPERFAMILY | SSF101898 | NHL repeat | 231 | 501 | 4.18E-18 | - |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 29 | 306 | 1.83E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 28 | 309 | 1.1E-101 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 599 | 696 | 9.6E-36 | - |
| SMART | SM00320 | WD40_4 | 97 | 136 | 7.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 183 | 224 | 5.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 227 | 266 | 3.4E-11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 55 | 94 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 15 | 52 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 180 | 1.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 461 | 499 | 450.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 234 | 275 | 14.852817 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 190 | 227 | 9.599237 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 233 | 12.814306 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 104 | 136 | 12.145943 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 234 | 265 | 11.919224 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 147 | 189 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 104 | 136 | 10.126507 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 147 | 183 | 9.941962 | - |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 211 | 225 | 6.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 123 | 137 | 6.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 253 | 267 | 6.1E-6 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.2 | structural molecules. | 0 |
| RefSeq | XP_039842373.1 | coatomer subunit beta'-1-like [Panicum virgatum] | 0 |
| Q5VQ78 | Coatomer subunit beta'-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0143900 PE=2 SV=1 | 0 | |
| TrEMBL | A2Y963 | Coatomer subunit beta' OS=Oryza sativa subsp. indica OX=39946 GN=OsI_21602 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology