Basic Information
Locus ID:
Chr20G013680
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein NRT1 PTR FAMILY
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 42059008 | 42061980 | + | Chr20G013680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 175 | 616 | 1.1E-22 | IPR001394 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 82 | 145 | 4.1E-5 | IPR001607 |
| SUPERFAMILY | SSF57850 | RING/U-box | 80 | 147 | 5.89E-7 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 178 | 618 | 3.14E-49 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 170 | 620 | 1.2E-49 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 157 | 1.6E-8 | IPR013083 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 80 | 148 | 10.904011 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 173 | 619 | 28.787697 | IPR028889 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_022683291.1 | ubiquitin carboxyl-terminal hydrolase 2 [Setaria italica] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A835AQ63 | Ubiquitin carboxyl-terminal hydrolase OS=Digitaria exilis OX=1010633 GN=HU200_052244 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology