Basic Information
Locus ID:
Chr20G013670
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein NRT1 PTR FAMILY
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 42051606 | 42056514 | + | Chr20G013670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 255 | 803 | 1.3E-40 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 123 | 206 | 4.12E-7 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 253 | 805 | 1.73E-69 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 480 | 806 | 7.5E-42 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 220 | 1.4E-7 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 235 | 472 | 4.4E-29 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 254 | 806 | 38.672729 | IPR028889 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 128 | 206 | 12.515198 | IPR001607 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 255 | 270 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 737 | 755 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 414 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 411 | 431 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 210 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 244 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 0 |
| RefSeq | XP_052164869.1 | ubiquitin carboxyl-terminal hydrolase 2-like [Oryza glaberrima] | 0 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0IEW6 | Ubiquitin carboxyl-terminal hydrolase OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology