Basic Information
Locus ID:
Chr20G013360
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
FIE
Description:
endosperm development
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 41801585 | 41806355 | + | Chr20G013360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 124 | 162 | 0.0081 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 176 | 208 | 4.6E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 38 | 370 | 8.96E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 28 | 373 | 6.9E-98 | IPR015943 |
| SMART | SM00320 | WD40_4 | 329 | 370 | 0.71 | IPR001680 |
| SMART | SM00320 | WD40_4 | 165 | 208 | 2.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 74 | 119 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 283 | 324 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 122 | 162 | 1.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 271 | 17.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 129 | 166 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 175 | 210 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 129 | 171 | 10.70896 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 175 | 210 | 9.572873 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 149 | 163 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 258 | 272 | 3.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 195 | 209 | 3.7E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 149 | 163 | 3.7E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20740.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein similar to the transcriptional regular of the animal Polycomb group and is involved in regulation of establishment of anterior-posterior polar axis in the endosperm and repression of flowering during vegetative phase. Mutation leads endosperm to develop in the absence of fertilization and flowers to form in seedlings and non-reproductive organs. Also exhibits maternal effect gametophytic lethal phenotype, which is suppressed by hypomethylation. Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE), CURLY LEAF (CLF) and SWINGER (SWN or EZA1). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. In the ovule, the FIE transcript levels increase transiently just after fertilization. | 0 |
| RefSeq | NP_001105182.1 | polycomb group protein FIE2 [Zea mays] | 0 |
| Q8VZY6 | Polycomb group protein FIE2 OS=Zea mays OX=4577 GN=FIE2 PE=2 SV=1 | 0 | |
| TrEMBL | C0HJ08 | Polycomb group protein FIE2 OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d024698 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg21474 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12347 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg18842, Sbi_jg37279 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5097 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007038 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl22862, Sgl23718, Sgl27980, Sgl28913 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000009891, gene:ENSEOMG00000027073 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021380, CQ.Regalona.r1.4AG0021390 ... |
| Apiaceae | Apium graveolens | 4 | Ag11G04800, Ag11G04801, Ag2G00494, Ag4G02685 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103699671 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2610.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G24904 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G20740.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020971m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g18760.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g042970.2N, BniB01g042990.2N, BniB07g050410.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1236 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1374 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g06690 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0318s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g17290 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1789 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00001644, Pov_00008915 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02551, Lb5G26691 |
| Poaceae | Echinochloa crus-galli | 8 | AH01.966, AH08.265, AH08.722, BH01.1105, BH08.251, CH01.1152 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_8AG0616580, gene-QOZ80_8BG0644110 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0702190.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_033153 |
| Poaceae | Oryza coarctata | 3 | Oco15G001590, Oco16G001690, Oco16G001710 |
| Poaceae | Oryza sativa | 2 | LOC_Os08g04270.1, LOC_Os08g04290.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_07G035300, gene-BS78_08G028100, gene-BS78_K080200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0402516, Pt_Chr0404331, Pt_Chr0404333 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr16G000880, Chr17G000840, Chr20G013120, Chr20G013360 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G187900, Tel7E01G518600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG058500, gene_TRIDC7AG010170 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G388400.1, TraesCS7A02G089100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb173090_P001, Zm00001eb416950_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-39152, nbis-gene-41514, nbis-gene-51560 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g18840, Zma_g23578 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.1659, evm.TU.LG09.257 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g08020 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.430 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-11036, nbisL1-mrna-11057 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16495 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10397 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.471 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013525 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-13301 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23580 |
| Salicaceae | Populus euphratica | 2 | populus_peu00379, populus_peu37315 |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132617017, gene-LOC132618128, gene-LOC132635324 |
| Solanaceae | Solanum chilense | 1 | SOLCI000270500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107024120 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_298 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G0927 |
| Zosteraceae | Zostera marina | 1 | Zosma05g17550.v3.1 |