Basic Information
Locus ID:
Chr20G012860
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 41468024 | 41470652 | + | Chr20G012860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 75 | 6.6E-9 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 454 | 709 | 1.1E-27 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 151 | 210 | 8.3E-10 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 420 | 709 | 1.37E-42 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 32 | 245 | 1.02E-43 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 147 | 268 | 8.2E-33 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 408 | 520 | 2.4E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 33 | 146 | 1.4E-24 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 521 | 713 | 3.6E-36 | - |
| SMART | SM00369 | LRR_typ_2 | 101 | 125 | 20.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 197 | 221 | 37.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 149 | 173 | 11.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 438 | 713 | 23.227121 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 413 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 327 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 401 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45340.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_025821391.1 | probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Panicum hallii] | 0 |
| Q9FXF2 | Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana OX=3702 GN=RKF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SNX0 | Protein kinase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_53832 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology