Basic Information
Locus ID:
Chr20G012110
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 40522552 | 40533734 | + | Chr20G012110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 404 | 757 | 9.90117E-67 | - |
| CDD | cd18793 | SF2_C_SNF | 996 | 1101 | 9.25462E-49 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 417 | 834 | 4.9E-67 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 873 | 909 | 2.2E-4 | IPR018957 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 994 | 1091 | 9.7E-14 | IPR001650 |
| SUPERFAMILY | SSF57850 | RING/U-box | 868 | 917 | 6.65E-11 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 765 | 1148 | 2.34E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 392 | 757 | 5.32E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 525 | 615 | 3.0E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 373 | 463 | 4.4E-12 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 772 | 1149 | 4.1E-63 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 616 | 769 | 7.2E-31 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 864 | 923 | 1.3E-10 | IPR013083 |
| SMART | SM00487 | ultradead3 | 400 | 738 | 1.8E-30 | IPR014001 |
| SMART | SM00490 | helicmild6 | 1008 | 1091 | 2.4E-17 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 548 | 719 | 12.319855 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 987 | 1144 | 13.217723 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 873 | 912 | 10.895954 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 888 | 897 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 467 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 198 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 607 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 86 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 608 | 624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 121 | 142 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_025800037.1 | helicase-like transcription factor CHR28 isoform X1 [Panicum hallii] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W4K6 | Helicase-like transcription factor CHR28 OS=Eragrostis curvula OX=38414 GN=EJB05_09494 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology