Basic Information
Locus ID:
Chr20G009970
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
and MATH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 35408157 | 35409113 | + | Chr20G009970 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 27 | 158 | 5.47183E-16 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 192 | 314 | 3.2E-21 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 25 | 163 | 9.81E-22 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 176 | 314 | 1.37E-23 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 27 | 162 | 2.4E-20 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 165 | 317 | 8.2E-29 | IPR011333 |
| SMART | SM00225 | BTB_4 | 199 | 315 | 6.2E-20 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 26 | 157 | 14.330971 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 199 | 275 | 16.176371 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G43700.3 | - | 0 |
| RefSeq | XP_004974328.1 | BTB/POZ and MATH domain-containing protein 2 [Setaria italica] | 0 |
| A1L4W5 | BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=BPM6 PE=1 SV=1 | 0 | |
| TrEMBL | K3YN23 | BTB domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G020000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_8AG0622620, gene-QOZ80_8AG0622680 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G021820, Chr20G009970, Chr20G009980, Chr29G009620 |