Basic Information
Locus ID:
Chr20G008310
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Glycosyl hydrolases family 38 C-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000020 | 20623593 | 20632390 | - | Chr20G008310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 24 | 301 | 8.36368E-166 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 25 | 303 | 3.3E-80 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 795 | 897 | 1.5E-7 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 561 | 731 | 6.2E-33 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 337 | 429 | 4.6E-18 | IPR015341 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 438 | 900 | 1.73E-91 | IPR011013 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 20 | 302 | 1.07E-93 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 336 | 431 | 4.25E-26 | IPR028995 |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 24 | 307 | 4.4E-111 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 328 | 379 | 4.0E-12 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 445 | 556 | 1.4E-25 | IPR013780 |
| Gene3D | G3DSA:2.60.40.1360 | - | 757 | 900 | 1.5E-24 | - |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 380 | 435 | 1.6E-19 | IPR037094 |
| Gene3D | G3DSA:2.70.98.30 | - | 558 | 744 | 2.7E-62 | - |
| SMART | SM00872 | Alpha_mann_mid_2 | 337 | 411 | 4.7E-20 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66150.2 | - | 0 |
| RefSeq | XP_002464752.1 | alpha-mannosidase [Sorghum bicolor] | 0 |
| C0HJB3 | Alpha-mannosidase OS=Canavalia ensiformis OX=3823 PE=1 SV=1 | 0 | |
| TrEMBL | C5WP48 | Alpha-mannosidase OS=Sorghum bicolor OX=4558 GN=SORBI_3001G268700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology